IL_8HL2_170

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

8HL2|1|A23S|A|2835, 8HL2|1|A23S|U|2836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_170 not in the Motif Atlas

Geometric match to IL_5J7L_349

Geometric discrepancy: 0.0982

The information below is about IL_5J7L_349

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8HL2|1|A23S|U|2820
8HL2|1|A23S|U|2821
*
8HL2|1|A23S|A|2834
8HL2|1|A23S|A|2835
8HL2|1|A23S|U|2836
8HL2|1|A23S|G|2837

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L31E

50S ribosomal protein L31e