IL_8HL2_175

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGUAAG*UUUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_175 not in the Motif Atlas

Geometric match to IL_4WF9_108

Geometric discrepancy: 0.2241

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

8HL2|1|A23S|U|2961
8HL2|1|A23S|G|2962
8HL2|1|A23S|U|2963
8HL2|1|A23S|A|2964
8HL2|1|A23S|A|2965
8HL2|1|A23S|G|2966
*
8HL2|1|A23S|U|2991
8HL2|1|A23S|U|2992
8HL2|1|A23S|U|2993
8HL2|1|A23S|A|2994
8HL2|1|A23S|G|2995

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL3P

50S ribosomal protein L3

Chain L24E

50S ribosomal protein L24e