IL_8HL2_177
3D structure
- PDB id
- 8HL2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CCCAC*GAUGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8HL2_177 not in the Motif Atlas
- Geometric match to IL_7VYX_008
- Geometric discrepancy: 0.3687
- The information below is about IL_7VYX_008
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8HL2|1|A5S|C|3
8HL2|1|A5S|C|4
8HL2|1|A5S|C|5
8HL2|1|A5S|A|6
8HL2|1|A5S|C|7
*
8HL2|1|A5S|G|118
8HL2|1|A5S|A|119
8HL2|1|A5S|U|120
8HL2|1|A5S|G|121
8HL2|1|A5S|G|122
Current chains
- Chain A5S
- 5s rRNA (122-MER)
Nearby chains
- Chain AL5P
- 50S ribosomal protein L5
- Chain L18P
- 50S ribosomal protein L18
Coloring options: