IL_8HL2_180

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GACUC*GAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_180 not in the Motif Atlas

Homologous match to IL_4V9F_104

Geometric discrepancy: 0.279

The information below is about IL_4V9F_104

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.13

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

13

Unit IDs

8HL2|1|A5S|G|35
8HL2|1|A5S|A|36
8HL2|1|A5S|C|37
8HL2|1|A5S|U|38
8HL2|1|A5S|C|39
*
8HL2|1|A5S|G|45
8HL2|1|A5S|A|46
8HL2|1|A5S|A|47
8HL2|1|A5S|C|48
8HL2|1|A5S|C|49

Current chains

Chain A5S

5s rRNA (122-MER)

Nearby chains

Chain AL5P

50S ribosomal protein L5

Chain L18P

50S ribosomal protein L18