IL_8HL2_188

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UAAAC*GGAUGUG

Length

12 nucleotides

Bulged bases

8HL2|1|A23S|U|282

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_188 not in the Motif Atlas

Homologous match to IL_4V9F_108

Geometric discrepancy: 0.3185

The information below is about IL_4V9F_108

Detailed Annotation

Kink-turn with embedded cWW pair

Broad Annotation

No text annotation

Motif group

IL_65996.1

Basepair signature

cWW-L-cWW-L-tSH-R-cWW

Number of instances in this motif group

4

Unit IDs

8HL2|1|A23S|U|253
8HL2|1|A23S|A|254
8HL2|1|A23S|A|255
8HL2|1|A23S|A|256
8HL2|1|A23S|C|257
*
8HL2|1|A23S|G|279
8HL2|1|A23S|G|280
8HL2|1|A23S|A|281
8HL2|1|A23S|U|282
8HL2|1|A23S|G|283
8HL2|1|A23S|U|284
8HL2|1|A23S|G|285

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L15E

50S ribosomal protein L15e

Chain L7A1

50S ribosomal protein L7Ae