IL_8HL4_082

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CGAAAG*CGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_082 not in the Motif Atlas

Geometric match to IL_9E6Q_019

Geometric discrepancy: 0.2949

The information below is about IL_9E6Q_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93336.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8HL4|1|A23S|C|584
8HL4|1|A23S|G|585
8HL4|1|A23S|A|586
8HL4|1|A23S|A|587
8HL4|1|A23S|A|588
8HL4|1|A23S|G|589
*
8HL4|1|A23S|C|645
8HL4|1|A23S|G|646
8HL4|1|A23S|G|647

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L32E

50S ribosomal protein L32e

Chain L46A

Conserved protein

Chain L7A2

50S ribosomal protein L7Ae