IL_8HL4_083

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

AAGUGAAC*GCGAU

Length

13 nucleotides

Bulged bases

8HL4|1|A23S|U|593

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_083 not in the Motif Atlas

Geometric match to IL_5G4U_006

Geometric discrepancy: 0.1866

The information below is about IL_5G4U_006

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_69229.2

Basepair signature

cWW-tHS-tSH-tSS-cWW-cWW-cWW-L

Number of instances in this motif group

11

Unit IDs

8HL4|1|A23S|A|590
8HL4|1|A23S|A|591
8HL4|1|A23S|G|592
8HL4|1|A23S|U|593
8HL4|1|A23S|G|594
8HL4|1|A23S|A|595
8HL4|1|A23S|A|596
8HL4|1|A23S|C|597
*
8HL4|1|A23S|G|640
8HL4|1|A23S|C|641
8HL4|1|A23S|G|642
8HL4|1|A23S|A|643
8HL4|1|A23S|U|644

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L32E

50S ribosomal protein L32e

Chain L7A2

50S ribosomal protein L7Ae