IL_8HL4_099

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GCG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_099 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.112

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

8HL4|1|A23S|G|991
8HL4|1|A23S|C|992
8HL4|1|A23S|G|993
*
8HL4|1|A23S|C|1057
8HL4|1|A23S|A|1058
8HL4|1|A23S|C|1059

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L21E

50S ribosomal protein L21e

Chain L30P

50S ribosomal protein L30