IL_8HL4_100
3D structure
- PDB id
- 8HL4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.62 Å
Loop
- Sequence
- GGUAG*CGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8HL4_100 not in the Motif Atlas
- Geometric match to IL_7RQB_027
- Geometric discrepancy: 0.1338
- The information below is about IL_7RQB_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_38862.1
- Basepair signature
- cWW-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8HL4|1|A23S|G|995
8HL4|1|A23S|G|996
8HL4|1|A23S|U|997
8HL4|1|A23S|A|998
8HL4|1|A23S|G|999
*
8HL4|1|A23S|C|1051
8HL4|1|A23S|G|1052
8HL4|1|A23S|A|1053
8HL4|1|A23S|A|1054
8HL4|1|A23S|C|1055
Current chains
- Chain A23S
- 23s rRNA (3000-MER)
Nearby chains
- Chain A5S
- 5S ribosomal RNA; 5S rRNA
- Chain L10E
- 50S ribosomal protein L10e
- Chain L18P
- 50S ribosomal protein L18
- Chain L21E
- 50S ribosomal protein L21e
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