IL_8HL4_126

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CUC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_126 not in the Motif Atlas

Geometric match to IL_4WF9_091

Geometric discrepancy: 0.3499

The information below is about IL_4WF9_091

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.9

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

8HL4|1|A23S|C|1632
8HL4|1|A23S|U|1633
8HL4|1|A23S|C|1634
*
8HL4|1|A23S|G|1673
8HL4|1|A23S|G|1674

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L34E

50S ribosomal protein L34e

Chain L45A

DUF2280 domain-containing protein