IL_8HL4_132

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

8HL4|1|A23S|G|2121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_132 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.209

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8HL4|1|A23S|A|1826
8HL4|1|A23S|C|1827
8HL4|1|A23S|U|1828
8HL4|1|A23S|C|1829
8HL4|1|A23S|G|1830
8HL4|1|A23S|G|1831
*
8HL4|1|A23S|C|2119
8HL4|1|A23S|U|2120
8HL4|1|A23S|G|2121
8HL4|1|A23S|U|2122

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL3P

50S ribosomal protein L3

Chain L14P

50S ribosomal protein L14