IL_8HL4_148

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GCGUAGAGUAG*CC

Length

13 nucleotides

Bulged bases

8HL4|1|A23S|G|2241, 8HL4|1|A23S|A|2245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_148 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1826

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8HL4|1|A23S|G|2239
8HL4|1|A23S|C|2240
8HL4|1|A23S|G|2241
8HL4|1|A23S|U|2242
8HL4|1|A23S|A|2243
8HL4|1|A23S|G|2244
8HL4|1|A23S|A|2245
8HL4|1|A23S|G|2246
8HL4|1|A23S|U|2247
8HL4|1|A23S|A|2248
8HL4|1|A23S|G|2249
*
8HL4|1|A23S|C|2307
8HL4|1|A23S|C|2308

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL1P

50S ribosomal protein L1