IL_8HL4_151

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CCUG*CAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCUG,CAGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_151 not in the Motif Atlas

Geometric match to IL_8C3A_439

Geometric discrepancy: 0.3979

The information below is about IL_8C3A_439

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

8HL4|1|A23S|C|2265
8HL4|1|A23S|C|2266
8HL4|1|A23S|U|2267
8HL4|1|A23S|G|2268
*
8HL4|1|A23S|C|2281
8HL4|1|A23S|A|2282
8HL4|1|A23S|G|2283
8HL4|1|A23S|G|2284

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains