IL_8HL4_181

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CCG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_181 not in the Motif Atlas

Geometric match to IL_7A0S_030

Geometric discrepancy: 0.3261

The information below is about IL_7A0S_030

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

8HL4|1|A5S|C|79
8HL4|1|A5S|C|80
8HL4|1|A5S|G|81
*
8HL4|1|A5S|C|101
8HL4|1|A5S|A|102
8HL4|1|A5S|G|103

Current chains

Chain A5S

5s rRNA (122-MER)

Nearby chains

Chain A23S

Large subunit ribosomal RNA; LSU rRNA

Chain L10E

50S ribosomal protein L10e

Chain L30P

50S ribosomal protein L30