IL_8HSP_050

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

8HSP|1|A|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HSP_050 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.1362

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

8HSP|1|A|G|1124
8HSP|1|A|U|1125
8HSP|1|A|U|1126
8HSP|1|A|G|1127
8HSP|1|A|C|1128
*
8HSP|1|A|G|1144
8HSP|1|A|A|1145
8HSP|1|A|A|1146
8HSP|1|A|C|1147
8HSP|1|A|U|1148
8HSP|1|A|C|1149

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10