IL_8HSP_081

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8HSP|1|a|G|801, 8HSP|1|a|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HSP_081 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0684

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8HSP|1|a|G|674
8HSP|1|a|A|675
8HSP|1|a|A|676
8HSP|1|a|A|677
8HSP|1|a|C|678
*
8HSP|1|a|G|799
8HSP|1|a|A|800
8HSP|1|a|G|801
8HSP|1|a|A|802
8HSP|1|a|U|803
8HSP|1|a|A|804
8HSP|1|a|G|805
8HSP|1|a|C|806

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15