IL_8HSP_165

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

8HSP|1|a|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HSP_165 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.0634

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8HSP|1|a|G|2737
8HSP|1|a|A|2738
8HSP|1|a|U|2739
8HSP|1|a|A|2740
8HSP|1|a|A|2741
8HSP|1|a|G|2742
*
8HSP|1|a|C|2762
8HSP|1|a|G|2763
8HSP|1|a|A|2764
8HSP|1|a|A|2765
8HSP|1|a|A|2766
8HSP|1|a|C|2767

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain g

50S ribosomal protein L6

Chain i

50S ribosomal protein L13