IL_8HSP_183

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HSP_183 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0694

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8HSP|1|a|U|1851
8HSP|1|a|U|1852
8HSP|1|a|A|1853
8HSP|1|a|A|1854
8HSP|1|a|U|1855
8HSP|1|a|U|1856
8HSP|1|a|G|1857
8HSP|1|a|A|1858
8HSP|1|a|U|1859
8HSP|1|a|G|1860
*
8HSP|1|a|U|1882
8HSP|1|a|U|1883
8HSP|1|a|G|1884
8HSP|1|a|A|1885
8HSP|1|a|U|1886
8HSP|1|a|C|1887
8HSP|1|a|G|1888
8HSP|1|a|A|1889
8HSP|1|a|A|1890
8HSP|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains