IL_8HTZ_109

3D structure

PDB id

8HTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8HTZ|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HTZ_109 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0606

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8HTZ|1|a|C|1208
8HTZ|1|a|U|1209
8HTZ|1|a|G|1210
8HTZ|1|a|C|1211
8HTZ|1|a|G|1212
8HTZ|1|a|A|1213
8HTZ|1|a|A|1214
8HTZ|1|a|G|1215
*
8HTZ|1|a|U|1234
8HTZ|1|a|G|1235
8HTZ|1|a|G|1236
8HTZ|1|a|A|1237
8HTZ|1|a|G|1238

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L20