IL_8HTZ_153

3D structure

PDB id

8HTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

C(PSU)GA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HTZ_153 not in the Motif Atlas

Geometric match to IL_4OQU_001

Geometric discrepancy: 0.3233

The information below is about IL_4OQU_001

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_15698.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

8HTZ|1|a|C|2456
8HTZ|1|a|PSU|2457
8HTZ|1|a|G|2458
8HTZ|1|a|A|2459
*
8HTZ|1|a|U|2493
8HTZ|1|a|G|2494
8HTZ|1|a|G|2495

Current chains

Chain a

23S rRNA

Nearby chains

Chain X

Transfer RNA; tRNA

Chain l

50S ribosomal protein L16