3D structure

PDB id
8HTZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CUAGUAC*GGACCG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8HTZ_163 not in the Motif Atlas
Homologous match to IL_5J7L_346
Geometric discrepancy: 0.0771
The information below is about IL_5J7L_346
Detailed Annotation
Sarcin-Ricin target in LSU H95; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_16458.4
Basepair signature
cWW-L-R-L-R-cSH-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

8HTZ|1|a|C|2652
8HTZ|1|a|U|2653
8HTZ|1|a|A|2654
8HTZ|1|a|G|2655
8HTZ|1|a|U|2656
8HTZ|1|a|A|2657
8HTZ|1|a|C|2658
*
8HTZ|1|a|G|2663
8HTZ|1|a|G|2664
8HTZ|1|a|A|2665
8HTZ|1|a|C|2666
8HTZ|1|a|C|2667
8HTZ|1|a|G|2668

Current chains

Chain a
23S rRNA

Nearby chains

Chain g
50S ribosomal protein L6
Chain j
50S ribosomal protein L14

Coloring options:


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