IL_8HTZ_187

3D structure

PDB id

8HTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HTZ_187 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0733

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8HTZ|1|a|U|1851
8HTZ|1|a|U|1852
8HTZ|1|a|A|1853
8HTZ|1|a|A|1854
8HTZ|1|a|U|1855
8HTZ|1|a|U|1856
8HTZ|1|a|G|1857
8HTZ|1|a|A|1858
8HTZ|1|a|U|1859
8HTZ|1|a|G|1860
*
8HTZ|1|a|U|1882
8HTZ|1|a|U|1883
8HTZ|1|a|G|1884
8HTZ|1|a|A|1885
8HTZ|1|a|U|1886
8HTZ|1|a|C|1887
8HTZ|1|a|G|1888
8HTZ|1|a|A|1889
8HTZ|1|a|A|1890
8HTZ|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains