IL_8HU1_180

3D structure

PDB id

8HU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HU1_180 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0528

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8HU1|1|a|G|1666
8HU1|1|a|G|1667
8HU1|1|a|A|1668
8HU1|1|a|A|1669
8HU1|1|a|C|1670
8HU1|1|a|U|1671
8HU1|1|a|A|1672
8HU1|1|a|G|1673
8HU1|1|a|G|1674
*
8HU1|1|a|C|1990
8HU1|1|a|U|1991
8HU1|1|a|G|1992
8HU1|1|a|U|1993
8HU1|1|a|C|1994

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14