3D structure

PDB id
8HU1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.69 Å

Loop

Sequence
UUAAUUGAUG*UUGAUCGAAG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8HU1_181 not in the Motif Atlas
Homologous match to IL_5J7L_387
Geometric discrepancy: 0.0837
The information below is about IL_5J7L_387
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_61249.1
Basepair signature
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW
Number of instances in this motif group
1

Unit IDs

8HU1|1|a|U|1851
8HU1|1|a|U|1852
8HU1|1|a|A|1853
8HU1|1|a|A|1854
8HU1|1|a|U|1855
8HU1|1|a|U|1856
8HU1|1|a|G|1857
8HU1|1|a|A|1858
8HU1|1|a|U|1859
8HU1|1|a|G|1860
*
8HU1|1|a|U|1882
8HU1|1|a|U|1883
8HU1|1|a|G|1884
8HU1|1|a|A|1885
8HU1|1|a|U|1886
8HU1|1|a|C|1887
8HU1|1|a|G|1888
8HU1|1|a|A|1889
8HU1|1|a|A|1890
8HU1|1|a|G|1891

Current chains

Chain a
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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