IL_8HZL_003

3D structure

PDB id

8HZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

A new fluorescent RNA aptamer_III bound with N

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAUUGUAAACAU*AGACAC

Length

18 nucleotides

Bulged bases

8HZL|1|A|U|37

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HZL_003 not in the Motif Atlas

Geometric match to IL_8HZL_006

Geometric discrepancy: 0.0935

The information below is about IL_8HZL_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65653.1

Basepair signature

cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8HZL|1|A|G|35
8HZL|1|A|A|36
8HZL|1|A|U|37
8HZL|1|A|U|38
8HZL|1|A|G|39
8HZL|1|A|U|40
8HZL|1|A|A|41
8HZL|1|A|A|42
8HZL|1|A|A|43
8HZL|1|A|C|44
8HZL|1|A|A|45
8HZL|1|A|U|46
*
8HZL|1|A|A|57
8HZL|1|A|G|58
8HZL|1|A|A|59
8HZL|1|A|C|60
8HZL|1|A|A|61
8HZL|1|A|C|62

Current chains

Chain A

RNA (84-MER)

Nearby chains