IL_8I9P_019
3D structure
- PDB id
- 8I9P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUG*CCA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9P_019 not in the Motif Atlas
- Homologous match to IL_5TBW_016
- Geometric discrepancy: 0.2968
- The information below is about IL_5TBW_016
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
8I9P|1|C1|U|420
8I9P|1|C1|U|421
8I9P|1|C1|G|422
*
8I9P|1|C1|C|616
8I9P|1|C1|C|617
8I9P|1|C1|A|618
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LO
- 60S ribosomal protein L16-like protein
- Chain Le
- 60S ribosomal protein L32-like protein
- Chain Lf
- 60S ribosomal protein l33-like protein
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