IL_8I9P_022

3D structure

PDB id

8I9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

8I9P|1|C1|U|449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9P_022 not in the Motif Atlas

Geometric match to IL_5J7L_017

Geometric discrepancy: 0.2301

The information below is about IL_5J7L_017

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8I9P|1|C1|A|448
8I9P|1|C1|U|449
8I9P|1|C1|C|450
*
8I9P|1|C1|G|465
8I9P|1|C1|U|466

Current chains

Chain C1

RNA (3341-MER)

Nearby chains