IL_8I9P_033

3D structure

PDB id

8I9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAAG*CUAGUAGC

Length

13 nucleotides

Bulged bases

8I9P|1|C1|A|914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9P|1|C1|G|786
8I9P|1|C1|A|787
8I9P|1|C1|A|788
8I9P|1|C1|A|789
8I9P|1|C1|G|790
*
8I9P|1|C1|C|912
8I9P|1|C1|U|913
8I9P|1|C1|A|914
8I9P|1|C1|G|915
8I9P|1|C1|U|916
8I9P|1|C1|A|917
8I9P|1|C1|G|918
8I9P|1|C1|C|919

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LC

60S ribosomal protein L4-like protein

Chain LL

60S ribosomal protein L13

Chain Lj

Ribosomal protein L37