IL_8I9R_001
3D structure
- PDB id
- 8I9R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9R_001 not in the Motif Atlas
- Geometric match to IL_4KQ0_003
- Geometric discrepancy: 0.1222
- The information below is about IL_4KQ0_003
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10892.2
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 58
Unit IDs
8I9R|1|C1|G|5
8I9R|1|C1|A|6
8I9R|1|C1|C|7
*
8I9R|1|C2|G|152
8I9R|1|C2|U|153
8I9R|1|C2|C|154
Current chains
- Chain C1
- RNA (3341-MER)
- Chain C2
- RNA (256-MER)
Nearby chains
- Chain CJ
- Pescadillo homolog
- Chain LG
- 60S ribosomal protein L8
- Chain LN
- Ribosomal protein L15
Coloring options: