IL_8I9R_077

3D structure

PDB id

8I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCAC*GCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9R_077 not in the Motif Atlas

Geometric match to IL_4EYA_010

Geometric discrepancy: 0.3087

The information below is about IL_4EYA_010

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8I9R|1|C1|G|3116
8I9R|1|C1|C|3117
8I9R|1|C1|A|3118
8I9R|1|C1|C|3119
*
8I9R|1|C1|G|3224
8I9R|1|C1|C|3225
8I9R|1|C1|G|3226
8I9R|1|C1|C|3227

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain Cd

Brix domain-containing protein

Chain LP

60S ribosomal protein l17-like protein

Chain Lf

60S ribosomal protein l33-like protein