IL_8I9R_083

3D structure

PDB id

8I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUG*CUUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9R_083 not in the Motif Atlas

Homologous match to IL_8C3A_135

Geometric discrepancy: 0.2398

The information below is about IL_8C3A_135

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8I9R|1|C1|U|3240
8I9R|1|C1|U|3241
8I9R|1|C1|U|3242
8I9R|1|C1|G|3243
*
8I9R|1|C1|C|3251
8I9R|1|C1|U|3252
8I9R|1|C1|U|3253
8I9R|1|C1|A|3254

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain Cg

Brix domain-containing protein

Chain LB

60S ribosomal protein L3-like protein

Chain LP

60S ribosomal protein l17-like protein