IL_8I9R_099

3D structure

PDB id

8I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAGUAG*CGAAUCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9R_099 not in the Motif Atlas

Homologous match to IL_5TBW_377

Geometric discrepancy: 0.2732

The information below is about IL_5TBW_377

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8I9R|1|C4|G|72
8I9R|1|C4|U|73
8I9R|1|C4|U|74
8I9R|1|C4|A|75
8I9R|1|C4|G|76
8I9R|1|C4|U|77
8I9R|1|C4|A|78
8I9R|1|C4|G|79
*
8I9R|1|C4|C|99
8I9R|1|C4|G|100
8I9R|1|C4|A|101
8I9R|1|C4|A|102
8I9R|1|C4|U|103
8I9R|1|C4|C|104
8I9R|1|C4|C|105

Current chains

Chain C4

RNA (119-MER)

Nearby chains

Chain Cy

Ribosome production factor 2 homolog