IL_8I9R_105

3D structure

PDB id

8I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUA*UAUUG

Length

9 nucleotides

Bulged bases

8I9R|1|C1|U|2464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9R_105 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.3187

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8I9R|1|C1|C|2406
8I9R|1|C1|A|2407
8I9R|1|C1|U|2408
8I9R|1|C1|A|2409
*
8I9R|1|C1|U|2461
8I9R|1|C1|A|2462
8I9R|1|C1|U|2463
8I9R|1|C1|U|2464
8I9R|1|C1|G|2465

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CP

RNA methyltransferase nop2-like protein