IL_8I9T_002
3D structure
- PDB id
- 8I9T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CC*GCG
- Length
- 5 nucleotides
- Bulged bases
- 8I9T|1|C2|C|151
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9T_002 not in the Motif Atlas
- Geometric match to IL_5TBW_002
- Geometric discrepancy: 0.2721
- The information below is about IL_5TBW_002
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_61258.13
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 40
Unit IDs
8I9T|1|C1|C|7
8I9T|1|C1|C|8
*
8I9T|1|C2|G|150
8I9T|1|C2|C|151
8I9T|1|C2|G|152
Current chains
- Chain C1
- RNA (3341-MER)
- Chain C2
- RNA (256-MER)
Nearby chains
- Chain CJ
- Pescadillo homolog
- Chain CS
- AdoMet-dependent rRNA methyltransferase SPB1
- Chain LG
- 60S ribosomal protein L8
- Chain LN
- Ribosomal protein L15
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