IL_8I9T_043

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUAAG*CCAUA

Length

10 nucleotides

Bulged bases

8I9T|1|C1|U|1313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9T_043 not in the Motif Atlas

Homologous match to IL_8C3A_051

Geometric discrepancy: 0.125

The information below is about IL_8C3A_051

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

8I9T|1|C1|U|1149
8I9T|1|C1|U|1150
8I9T|1|C1|A|1151
8I9T|1|C1|A|1152
8I9T|1|C1|G|1153
*
8I9T|1|C1|C|1310
8I9T|1|C1|C|1311
8I9T|1|C1|A|1312
8I9T|1|C1|U|1313
8I9T|1|C1|A|1314

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LF

60S ribosomal protein l7-like protein

Chain Le

60S ribosomal protein L32-like protein

Chain Lf

60S ribosomal protein l33-like protein