IL_8I9T_065

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

8I9T|1|C1|A|2766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9T_065 not in the Motif Atlas

Geometric match to IL_4V88_409

Geometric discrepancy: 0.1755

The information below is about IL_4V88_409

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8I9T|1|C1|G|2374
8I9T|1|C1|A|2375
*
8I9T|1|C1|U|2765
8I9T|1|C1|A|2766
8I9T|1|C1|C|2767

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CG

60S ribosome subunit biogenesis protein NIP7

Chain CK

Ribosome biogenesis protein NSA2 homolog

Chain CU

rRNA-processing protein EBP2