IL_8I9T_100
3D structure
- PDB id
- 8I9T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UG*UGAA
- Length
- 6 nucleotides
- Bulged bases
- 8I9T|1|C3|G|54, 8I9T|1|C3|A|55
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9T_100 not in the Motif Atlas
- Geometric match to IL_5WLH_001
- Geometric discrepancy: 0.1874
- The information below is about IL_5WLH_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_71421.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8I9T|1|C3|U|26
8I9T|1|C3|G|27
*
8I9T|1|C3|U|53
8I9T|1|C3|G|54
8I9T|1|C3|A|55
8I9T|1|C3|A|56
Current chains
- Chain C3
- RNA (161-MER)
Nearby chains
- Chain CB
- Ribosome biogenesis protein C8F11.04
- Chain CE
- RNA helicase
- Chain CI
- Putative RNA-binding protein
- Chain CM
- 60S ribosomal protein l7-like protein
- Chain LG
- 60S ribosomal protein L8
Coloring options: