IL_8I9T_104
3D structure
- PDB id
- 8I9T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AUGC*GCU
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9T_104 not in the Motif Atlas
- Geometric match to IL_8C3A_070
- Geometric discrepancy: 0.3173
- The information below is about IL_8C3A_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15698.1
- Basepair signature
- cWW-tSH-cSH-cWW
- Number of instances in this motif group
- 9
Unit IDs
8I9T|1|C1|A|157
8I9T|1|C1|U|158
8I9T|1|C1|G|159
8I9T|1|C1|C|160
*
8I9T|1|C1|G|248
8I9T|1|C1|C|249
8I9T|1|C1|U|250
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CC
- Ribosome biogenesis protein ERB1
- Chain CE
- RNA helicase
- Chain CR
- Nucleolar protein 16
- Chain LL
- 60S ribosomal protein L13
- Chain Lh
- dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Li
- 60S ribosomal protein L36
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