IL_8I9V_027

3D structure

PDB id

8I9V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAG*CGCAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9V_027 not in the Motif Atlas

Homologous match to IL_8C3A_025

Geometric discrepancy: 0.2216

The information below is about IL_8C3A_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8I9V|1|C1|A|712
8I9V|1|C1|G|713
8I9V|1|C1|A|714
8I9V|1|C1|G|715
*
8I9V|1|C1|C|722
8I9V|1|C1|G|723
8I9V|1|C1|C|724
8I9V|1|C1|A|725
8I9V|1|C1|U|726

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LQ

Ribosomal protein L18-like protein