IL_8I9V_040

3D structure

PDB id

8I9V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUU*GUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9V_040 not in the Motif Atlas

Geometric match to IL_4XW0_002

Geometric discrepancy: 0.3791

The information below is about IL_4XW0_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8I9V|1|C1|C|1050
8I9V|1|C1|C|1051
8I9V|1|C1|U|1052
8I9V|1|C1|U|1053
*
8I9V|1|C1|G|1069
8I9V|1|C1|U|1070
8I9V|1|C1|G|1071
8I9V|1|C1|G|1072

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LT

60S ribosomal protein l21-like protein