IL_8I9V_107

3D structure

PDB id

8I9V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCCC*GG

Length

6 nucleotides

Bulged bases

8I9V|1|C1|C|2730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9V_107 not in the Motif Atlas

Geometric match to IL_4V83_236

Geometric discrepancy: 0.3544

The information below is about IL_4V83_236

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

8I9V|1|C1|U|2729
8I9V|1|C1|C|2730
8I9V|1|C1|C|2731
8I9V|1|C1|C|2732
*
8I9V|1|C1|G|2744
8I9V|1|C1|G|2745

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CP

RNA methyltransferase nop2-like protein