IL_8I9W_005

3D structure

PDB id

8I9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUAGUAA*UGAAGCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9W_005 not in the Motif Atlas

Homologous match to IL_8C3A_006

Geometric discrepancy: 0.1524

The information below is about IL_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88613.1

Basepair signature

cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8I9W|1|C1|C|82
8I9W|1|C1|C|83
8I9W|1|C1|U|84
8I9W|1|C1|A|85
8I9W|1|C1|G|86
8I9W|1|C1|U|87
8I9W|1|C1|A|88
8I9W|1|C1|A|89
*
8I9W|1|C1|U|97
8I9W|1|C1|G|98
8I9W|1|C1|A|99
8I9W|1|C1|A|100
8I9W|1|C1|G|101
8I9W|1|C1|C|102
8I9W|1|C1|G|103

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CA

Brix domain-containing protein

Chain LL

60S ribosomal protein L13

Chain LN

Ribosomal protein L15