IL_8I9W_012

3D structure

PDB id

8I9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9W_012 not in the Motif Atlas

Homologous match to IL_8C3A_012

Geometric discrepancy: 0.2154

The information below is about IL_8C3A_012

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

8I9W|1|C1|C|172
8I9W|1|C1|U|173
*
8I9W|1|C1|A|230
8I9W|1|C1|A|231
8I9W|1|C1|G|232

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain CR

Nucleolar protein 16

Chain LL

60S ribosomal protein L13

Chain Lh

dolichyl-diphosphooligosaccharide--protein glycotransferase

Chain Lj

Ribosomal protein L37