IL_8I9W_013
3D structure
- PDB id
- 8I9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUC*GUUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9W_013 not in the Motif Atlas
- Geometric match to IL_3R2D_002
- Geometric discrepancy: 0.1832
- The information below is about IL_3R2D_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8I9W|1|C1|C|175
8I9W|1|C1|U|176
8I9W|1|C1|U|177
8I9W|1|C1|C|178
*
8I9W|1|C1|G|225
8I9W|1|C1|U|226
8I9W|1|C1|U|227
8I9W|1|C1|G|228
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CR
- Nucleolar protein 16
- Chain LY
- 60S ribosomal protein L26-like protein
- Chain Lj
- Ribosomal protein L37
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