IL_8I9W_063

3D structure

PDB id

8I9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9W_063 not in the Motif Atlas

Geometric match to IL_7ELQ_002

Geometric discrepancy: 0.2342

The information below is about IL_7ELQ_002

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8I9W|1|C1|G|2353
8I9W|1|C1|C|2354
8I9W|1|C1|G|2355
8I9W|1|C1|G|2356
*
8I9W|1|C1|U|2944
8I9W|1|C1|A|2945
8I9W|1|C1|C|2946

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LO

60S ribosomal protein L16-like protein