IL_8I9W_105

3D structure

PDB id

8I9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCCC*GGC

Length

8 nucleotides

Bulged bases

8I9W|1|C1|C|2730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9W_105 not in the Motif Atlas

Geometric match to IL_8C3A_419

Geometric discrepancy: 0.3035

The information below is about IL_8C3A_419

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47767.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

8I9W|1|C1|G|2728
8I9W|1|C1|U|2729
8I9W|1|C1|C|2730
8I9W|1|C1|C|2731
8I9W|1|C1|C|2732
*
8I9W|1|C1|G|2744
8I9W|1|C1|G|2745
8I9W|1|C1|C|2746

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CP

RNA methyltransferase nop2-like protein