IL_8I9Y_025

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAG*CGCAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9Y_025 not in the Motif Atlas

Homologous match to IL_8C3A_025

Geometric discrepancy: 0.2008

The information below is about IL_8C3A_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8I9Y|1|C1|A|712
8I9Y|1|C1|G|713
8I9Y|1|C1|A|714
8I9Y|1|C1|G|715
*
8I9Y|1|C1|C|722
8I9Y|1|C1|G|723
8I9Y|1|C1|C|724
8I9Y|1|C1|A|725
8I9Y|1|C1|U|726

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LQ

Ribosomal protein L18-like protein