IL_8I9Y_029

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9Y_029 not in the Motif Atlas

Geometric match to IL_3GM7_004

Geometric discrepancy: 0.1492

The information below is about IL_3GM7_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8I9Y|1|C1|C|784
8I9Y|1|C1|C|785
8I9Y|1|C1|G|786
*
8I9Y|1|C1|C|919
8I9Y|1|C1|U|920
8I9Y|1|C1|G|921

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CS

AdoMet-dependent rRNA methyltransferase SPB1

Chain LC

60S ribosomal protein L4-like protein