IL_8I9Y_055
3D structure
- PDB id
- 8I9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGU*AGUG
- Length
- 7 nucleotides
- Bulged bases
- 8I9Y|1|C1|G|1411
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9Y_055 not in the Motif Atlas
- Homologous match to IL_8C3A_061
- Geometric discrepancy: 0.0552
- The information below is about IL_8C3A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73554.3
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8I9Y|1|C1|C|1358
8I9Y|1|C1|G|1359
8I9Y|1|C1|U|1360
*
8I9Y|1|C1|A|1410
8I9Y|1|C1|G|1411
8I9Y|1|C1|U|1412
8I9Y|1|C1|G|1413
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CV
- Putative 60S ribosomal protein
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain Le
- 60S ribosomal protein L32-like protein
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