IL_8I9Y_062
3D structure
- PDB id
- 8I9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 8I9Y|1|C1|A|1567, 8I9Y|1|C1|A|1568
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9Y_062 not in the Motif Atlas
- Homologous match to IL_8C3A_067
- Geometric discrepancy: 0.1527
- The information below is about IL_8C3A_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8I9Y|1|C1|C|1514
8I9Y|1|C1|U|1515
8I9Y|1|C1|A|1516
8I9Y|1|C1|A|1517
8I9Y|1|C1|G|1518
*
8I9Y|1|C1|C|1564
8I9Y|1|C1|G|1565
8I9Y|1|C1|A|1566
8I9Y|1|C1|A|1567
8I9Y|1|C1|A|1568
8I9Y|1|C1|G|1569
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Lg
- Ribosomal protein l34-like protein
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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